miRge3.0

An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output.

miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below.

Links

• Documentation

• Source code

• Report an issue

• Project page on PyPI

Table of contents

• Installation
  • Linux OS
  • macOS
  • Windows OS
• User guide
  • Parameters
  • miRge3.0 libraries
  • CLI - Example usage
  • miRge3.0 GUI
  • Resources
• miRge3.0 output
  • Command and sample run with UMI datasets
  • Output tree structure
  • miRge - interactive visualization
  • Resources:
• MIT License